G-BIKE – Poznanie genómovej biodiverzity pre odolné ekosystémy
Genomic biodiversity knowledge for resilient ecosystems
Program: COST
Zodpovedný riešiteľ: RNDr. Čiampor Fedor, PhD.
Annotation: In a rapidly changing environment the resilience of ecosystems depends ultimately on species adaptability. G-BIKE will enable standard and routine tools for assessing, monitoring and managing the genetic resilience and related adaptive potential of wild and captive populations. Although genetic data can be obtained for most organisms, the standardization of protocols for detecting and monitoring species’ genetic diversity, and their potential for adaptation, is still lacking. G-BIKE will assist scientists and practitioners across the EU and particularly in COST Inclusiveness Target Countries to integrate genetic and evolutionary knowledge into conservation planning policies, and to promote cross-border management and long term monitoring programs of evolutionary potential in order to ensure persistence of populations and species, and ultimately the continued supply of nature-based ecosystem services. Considering the drastic impacts of climate change during the coming decades, G-BIKE is especially urgent. The following aims will be accomplished by involving a balanced representation of scientists and practitioners from a diversity of countries: 1) clearly articulating for managers how genetic diversity can support ecosystems; 2) developing and testing best practice protocols for monitoring genetic diversity in time and space; 3) providing an online forum on emerging tools; 4) connecting all stakeholders through networking and training opportunities; 4) building a network of conservation genetics labs; 5) building a foundation for long term impact.
Project web page:
Duration: 1.3.2019 – 31.3.2023


Ako environmentálna DNA (eDNA) odráža život v alpínskych jazerách a ich povodiach: DNA metabarkóding vo výskume tatranských plies
How environmental DNA (eDNA) reflects life in alpine lakes and their catchments: DNA metabarcoding in the Tatra lakes research
Program: VEGA
Zodpovedný riešiteľ: RNDr. Čiamporová-Zaťovičová Zuzana, PhD.
Annotation: Alpine lakes are globally unique aquatic habitats contributing significantly to the regional biodiversity and preserving ecosystem services. However, many of them are at risk, in particular from human activity and climate change. Their protection is therefore crucial, but must be based on accurate and up-to-date data. The project, following previous research of Tatra lakes, will for the first time use innovative molecular methods in the assessment of the alpine lakes biodiversity: metabarcoding, analysis of environmental DNA, NGS. They have great potential to describe the current state of biodiversity of lakes and their catchments in detail, detect rare/non-native species, determine the impact of environmental factors on aquatic biota and assess the species genetic variability. The project also includes the generation of reference molecular data (DNA barcoding) of the Tatra aquatic fauna, which is essential for the correct interpretation of metabarcoding data and will enable their use in modern monitoring.
Duration: 1.1.2021 – 31.12.2024
NGS dáta v taxonómii vodných živočíchov: nové postupy vo výskume diverzity vodných chrobákov v čaase drastického celosvetového úbytku hmyzu
NGS data in aquatic animal taxonomy: new approaches to researching the diversity of aquatic beetles in a time of massive global insect decline
Program: VEGA
Zodpovedný riešiteľ: RNDr. Čiampor Fedor, PhD.
Annotation: According to the latest information, we are possibly facing massive insect extinction, which may have catastrophic consequences for humans. Aquatic insects, inevitable for freshwater ecosystems functioning, are also critically endangered, but we do not know its real diversity and are thus not capable of effective protection. To improve this, we need better data and innovate approaches in the biodiversity research.This project is focused on the world\’s diversity of water beetles, and will be based on the already stored and newly collected (mainly in tropical regions) material. The main goal is to significantly improve knowledge of the diversity of studied taxa and contribute to their protection by combining standard (morphology, DNA barcoding), and High Throughput Sequencing.The project\’s innovation is in the use of DNA metabarcoding adjusted for taxonomy purposes. Expected outputs are new taxa, reference barcodes database and estimate of the trends in the evolution of the aquatic beetles diversity.
Duration: 1.1.2020 – 31.12.2023
Taxonómia čeľadí Elmidae, Protelmidae a Dryopidae
Taxonomy of families Elmidae, Protelmidae and Dryopidae (Insecta: Coleoptera)
Program: VEGA
Zodpovedný riešiteľ: RNDr. Čiampor Fedor, PhD.
Annotation: Beetles of the families Elmidae, Protelmidae and Dryopidae are adapted with their morphology and physiology primarily to life in the aquatic environment. Rather exceptionally are some Dryopidae from the wet tropics terrestrial (e.g. Sostea, Geoparnus, Spalacosostea, Monstrosostea).
The biodiversity of these groups and their evolutionary history are still poorly known, despite their almost cosmopolitan distribution and great importance in eco-environmental research. This project deals with taxonomy and reconstruction of phylogeny of studied beetles by a complex molecular-morphological approach. It is focused on the systematic position of the questionable and newly described taxa, and recognition of evolutionary patterns in the phylogeny of Elmidae, Protelmidae and Dryopidae.
Duration: 1.1.2019 – 31.12.2022